Development of genome viewer (Web Omics Viewer) for managing databases of cucumber genome

M. Wojcieszek; P. Róż; M. Pawełkowicz; R. Nowak; Z. Przybecki

doi:10.1117/12.2000236

15 October 2012 Development of genome viewer (Web Omics Viewer) for managing databases of cucumber genome

M. Wojcieszek, P. Róż, M. Pawełkowicz, R. Nowak, Z. Przybecki

Proceedings Volume 8454, Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments 2012; 84541Y (2012) https://doi.org/10.1117/12.2000236
Event: Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments 2012, 2012, Wilga, Poland

Abstract

Cucumber is an important plant in horticulture and science world. Sequencing projects of C. sativus genome enable new methodological aproaches in further investigation of this species. Accessibility is crucial to fully exploit obtained information about detail structure of genes, markers and other characteristic features such contigs, scaffolds and chromosomes. Genome viewer is one of tools providing plain and easy way for presenting genome data for users and for databases administration. Gbrowse - the main viewer has several very useful features but lacks in managing simplicity. Our group developed new genome browser Web Omics Viewer (WOV), keeping functionality but improving utilization and accessibility to cucumber genome data.

Citation Download Citation

M. Wojcieszek, P. Róż, M. Pawełkowicz, R. Nowak, and Z. Przybecki "Development of genome viewer (Web Omics Viewer) for managing databases of cucumber genome", Proc. SPIE 8454, Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments 2012, 84541Y (15 October 2012); https://doi.org/10.1117/12.2000236

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