CIVILITY: cloud based interactive visualization of tractography brain connectome

Danaële Puechmaille; Martin Styner; Juan C. Prieto

doi:10.1117/12.2254673

13 March 2017 CIVILITY: cloud based interactive visualization of tractography brain connectome

Danaële Puechmaille, Martin Styner, Juan C. Prieto

Proceedings Volume 10137, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging; 101370R (2017) https://doi.org/10.1117/12.2254673
Event: SPIE Medical Imaging, 2017, Orlando, Florida, United States

Abstract

Cloud based Interactive Visualization of Tractography Brain Connectome (CIVILITY) is an interactive visualization tool of brain connectome in the cloud. This application submits tasks to remote computing grids were the CIVILITY-tractography pipeline is deployed. The application will list the running tasks for the user and once a task is completed the brain connectome is visualized using Hierarchical Edge Bundling. The analysis pipeline uses FSL tools (bedpostx and probtrackx2) to generate a triangular matrix indicating the connectivity strength between different regions in the brain. This work is motivated by medical applications in which expensive computational tasks such as brain connectivity is needed and to provide a state of the art visualization tool of Brain Connectome.

This work does not contribute any novelty with respect to the visualization methodology, is rather a new resource for the neuroimaging community. This work is submitted to the SPIE Biomedical Applications in Molecular, Structural, and Functional Imaging conference. The source code of this application is available in NITRC∗

Conference Presentation

Citation Download Citation

Danaële Puechmaille, Martin Styner, and Juan C. Prieto "CIVILITY: cloud based interactive visualization of tractography brain connectome", Proc. SPIE 10137, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging, 101370R (13 March 2017); https://doi.org/10.1117/12.2254673

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